If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 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=> 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 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=> 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ), 'gf_id' => 'HOM05D000574', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000574' ), 'data_identifier' => 'HOM05D000574', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000574', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '967', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07810' => 'bna', 'A01p08200' => 'bna', 'A02p08280' => 'bna', 'A02p08700' => 'bna', 'A03p22570' => 'bna', 'A03p48910' => 'bna', 'A03p59770' => 'bna', 'A04p06900' => 'bna', 'A04p27550' => 'bna', 'A05p06280' => 'bna', 'A05p15490' => 'bna', 'A08p19500' => 'bna', 'A09p01440' => 'bna', 'A09p45620' => 'bna', 'A09p66590' => 'bna', 'A10p05760' => 'bna', 'A10p14480' => 'bna', 'A10p15100' => 'bna', 'Aa31LG10G7540' => 'aar', 'Aa31LG1G6390' => 'aar', 'Aa31LG2G20180' => 'aar', 'Aa31LG2G20630' => 'aar', 'Aa31LG3G13550' => 'aar', 'Aa31LG5G19440' => 'aar', 'Aa31LG5G6720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2930' => 'aag', 'Actinidia02496' => 'ach', 'Actinidia03842' => 'ach', 'Actinidia03896' => 'ach', 'Actinidia04005' => 'ach', 'Actinidia04113' => 'ach', 'Actinidia06685' => 'ach', 'Actinidia07551' => 'ach', 'Actinidia17332' => 'ach', 'Actinidia23886' => 'ach', 'Actinidia24023' => 'ach', 'Actinidia25169' => 'ach', 'Actinidia32051' => 'ach', 'Actinidia33314' => 'ach', 'Actinidia33315' => 'ach', 'Actinidia33921' => 'ach', 'Actinidia34455' => 'ach', 'Actinidia38649' => 'ach', 'Ah.04g162510' => 'amhyb', 'Ah.06g186690' => 'amhyb', 'Ah.06g186700' => 'amhyb', 'Ah.08g210110' => 'amhyb', 'Ah.09g229620' => 'amhyb', 'Ah.12g053420' => 'amhyb', 'Ah.14g084050' => 'amhyb', 'Ah.15g090470' => 'amhyb', 'Ah.16g103530' => 'amhyb', 'AL1G17340' => 'aly', 'AL4G24720' => 'aly', 'AL4G37830' => 'aly', 'AL5G33200' => 'aly', 'AL7G21800' => 'aly', 'AL7G22320' => 'aly', 'AL8G33060' => 'aly', 'AL8G33750' => 'aly', 'Aqoxy2G00878' => 'aox', 'Aqoxy4G02667' => 'aox', 'Aqoxy7G02882' => 'aox', 'Aqoxy7G03186' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H46IG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0S1UWQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34K2NR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TX9RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WY9SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BS001' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8H1KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7V948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EY6A1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9PLIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNDY6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4LRUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5LGTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8XGJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0KM98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UDFI8U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W50AUC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WDF2TS' => 'arhy', 'AT1G07200' => 'ath', 'AT2G29970' => 'ath', 'AT2G40130' => 'ath', 'AT3G52490' => 'ath', 'AT4G29920' => 'ath', 'AT4G30350' => 'ath', 'AT5G57130' => 'ath', 'AT5G57710' => 'ath', 'ATR0580G287' => 'atr', 'ATR0580G310' => 'atr', 'ATR0681G118' => 'atr', 'ATR0772G150' => 'atr', 'ATR0772G208' => 'atr', 'Atru.chr12.1062' => 'acertr', 'Atru.chr12.42' => 'acertr', 'Atru.chr12.43' => 'acertr', 'Atru.chr3.4200' => 'acertr', 'Atru.chr7.551' => 'acertr', 'Atru.chr7.939' => 'acertr', 'Atru.chr8.1385' => 'acertr', 'AUR62006277' => 'cqu', 'AUR62012257' => 'cqu', 'AUR62020145' => 'cqu', 'AUR62022889' => 'cqu', 'AUR62034178' => 'cqu', 'AUR62037045' => 'cqu', 'AUR62037046' => 'cqu', 'AUR62039978' => 'cqu', 'AUR62040287' => 'cqu', 'AUR62041558' => 'cqu', 'BcaB01g00361' => 'bca', 'BcaB01g03568' => 'bca', 'BcaB02g08566' => 'bca', 'BcaB02g09046' => 'bca', 'BcaB02g10284' => 'bca', 'BcaB03g12625' => 'bca', 'BcaB05g22323' => 'bca', 'BcaB05g22369' => 'bca', 'BcaB06g26062' => 'bca', 'BcaB06g28903' => 'bca', 'BcaB08g35999' => 'bca', 'BcaB08g36131' => 'bca', 'BcaC01g01202' => 'bca', 'BcaC01g05428' => 'bca', 'BcaC02g07642' => 'bca', 'BcaC02g09251' => 'bca', 'BcaC02g11075' => 'bca', 'BcaC02g12129' => 'bca', 'BcaC03g14131' => 'bca', 'BcaC03g14179' => 'bca', 'BcaC04g19934' => 'bca', 'BcaC04g20006' => 'bca', 'BcaC05g27185' => 'bca', 'BcaC06g32920' => 'bca', 'BcaC06g33394' => 'bca', 'BcaC07g39616' => 'bca', 'BcaC07g39617' => 'bca', 'BcaC07g42021' => 'bca', 'BcaC07g42448' => 'bca', 'BcaC09g51774' => 'bca', 'BcaC09g51822' => 'bca', 'BcaC09g52234' => 'bca', 'BcaNung00541' => 'bca', 'BcaNung02996' => 'bca', 'BcaNung06409' => 'bca', 'BolC1t00857H' => 'bol', 'BolC1t00907H' => 'bol', 'BolC2t07515H' => 'bol', 'BolC2t07578H' => 'bol', 'BolC3t15061H' => 'bol', 'BolC3t21212H' => 'bol', 'BolC4t22349H' => 'bol', 'BolC4t23459H' => 'bol', 'BolC4t23610H' => 'bol', 'BolC4t25632H' => 'bol', 'BolC4t27982H' => 'bol', 'BolC5t29299H' => 'bol', 'BolC7t45217H' => 'bol', 'BolC7t46243H' => 'bol', 'BolC8t50394H' => 'bol', 'BolC8t52605H' => 'bol', 'BolC9t57739H' => 'bol', 'BolC9t57813H' => 'bol', 'BraA01t00725Z' => 'bra', 'BraA01t00766Z' => 'bra', 'BraA02t05900Z' => 'bra', 'BraA02t05940Z' => 'bra', 'BraA03t11483Z' => 'bra', 'BraA03t13992Z' => 'bra', 'BraA03t15031Z' => 'bra', 'BraA04t16390Z' => 'bra', 'BraA04t18250Z' => 'bra', 'BraA05t19596Z' => 'bra', 'BraA05t20465Z' => 'bra', 'BraA08t32380Z' => 'bra', 'BraA08t33911Z' => 'bra', 'BraA09t40023Z' => 'bra', 'BraA09t41997Z' => 'bra', 'BraA10t42837Z' => 'bra', 'BraA10t43538Z' => 'bra', 'BraA10t43593Z' => 'bra', 'C01p08710' => 'bna', 'C01p09160' => 'bna', 'C02p13970' => 'bna', 'C02p14540' => 'bna', 'C03p26760' => 'bna', 'C03p89020' => 'bna', 'C04p07240' => 'bna', 'C04p19260' => 'bna', 'C04p20790' => 'bna', 'C04p22820' => 'bna', 'C04p38190' => 'bna', 'C04p40520' => 'bna', 'C04p65040' => 'bna', 'C05p05280' => 'bna', 'C06p28560' => 'bna', 'C07p47000' => 'bna', 'C07p57830' => 'bna', 'C08p27790' => 'bna', 'C08p50770' => 'bna', 'C09p48900' => 'bna', 'C09p49580' => 'bna', 'CAN.G1013.21' => 'can', 'CAN.G1245.15' => 'can', 'CAN.G143.16' => 'can', 'CAN.G19.14' => 'can', 'CAN.G234.17' => 'can', 'CAN.G33.17' => 'can', 'CAN.G367.2' => 'can', 'CAN.G46.47' => 'can', 'CAN.G574.30' => 'can', 'CAN.G584.37' => 'can', 'CAN.G584.38' => 'can', 'CANSAT01G1160' => 'cansat', 'CANSAT11G2168' => 'cansat', 'CANSAT54G0082' => 'cansat', 'CANSAT56G3554' => 'cansat', 'CANSAT64G1039' => 'cansat', 'CARHR006920' => 'chi', 'CARHR123210' => 'chi', 'CARHR130240' => 'chi', 'CARHR135140' => 'chi', 'CARHR162260' => 'chi', 'CARHR237840' => 'chi', 'CARHR238250' => 'chi', 'CARHR270910' => 'chi', 'CARHR271460' => 'chi', 'Carub.0001s0649' => 'cru', 'Carub.0004s1105' => 'cru', 'Carub.0004s1773' => 'cru', 'Carub.0004s2234' => 'cru', 'Carub.0005s1888' => 'cru', 'Carub.0007s1025' => 'cru', 'Carub.0007s1072' => 'cru', 'Carub.0008s1764' => 'cru', 'Carub.0008s1822' => 'cru', 'Ca_02120_v3' => 'car', 'Ca_05607_v3' => 'car', 'Ca_10434_v3' => 'car', 'Ca_11715_v3' => 'car', 'Ca_14942_v3' => 'car', 'Ca_15129_v3' => 'car', 'Ca_21258_v3' => 'car', 'Cc01_g14300' => 'ccan', 'Cc02_g06450' => 'ccan', 'Cc02_g09480' => 'ccan', 'Cc06_g06420' => 'ccan', 'Cc06_g13800' => 'ccan', 'Cc06_g17450' => 'ccan', 'CDE02G0201' => 'cde', 'CDE02G4025' => 'cde', 'CDE04G0371' => 'cde', 'CDE04G1186' => 'cde', 'CDE06G0291' => 'cde', 'CDE06G1411' => 'cde', 'CDE08G0693' => 'cde', 'CDE10G0199' => 'cde', 'CDE10G0350' => 'cde', 'CDE10G0554' => 'cde', 'CDE12G0815' => 'cde', 'Cfa001313' => 'cfa', 'Cfa010535' => 'cfa', 'Cfa011706' => 'cfa', 'Cfa013537' => 'cfa', 'Cfa016676' => 'cfa', 'Ciclev10007320m.g' => 'ccl', 'Ciclev10007337m.g' => 'ccl', 'Ciclev10011051m.g' => 'ccl', 'Ciclev10014322m.g' => 'ccl', 'Ciclev10027720m.g' => 'ccl', 'Ciclev10030554m.g' => 'ccl', 'CiPaw.01G299500' => 'cil', 'CiPaw.07G187600' => 'cil', 'CiPaw.07G198200' => 'cil', 'CiPaw.08G032000' => 'cil', 'CiPaw.08G039300' => 'cil', 'CiPaw.09G019700' => 'cil', 'CiPaw.10G016100' => 'cil', 'CiPaw.13G043000' => 'cil', 'CiPaw.13G076600' => 'cil', 'CiPaw.14G034500' => 'cil', 'CiPaw.14G058700' => 'cil', 'ClCG03G000700' => 'cla', 'ClCG06G012950' => 'cla', 'ClCG06G013680' => 'cla', 'ClCG08G008410' => 'cla', 'ClCG10G018460' => 'cla', 'ClCG11G006090' => 'cla', 'ClCG11G011650' => 'cla', 'ClCG11G012250' => 'cla', 'COL.COLO4_16072' => 'col', 'COL.COLO4_19171' => 'col', 'COL.COLO4_23438' => 'col', 'COL.COLO4_25739' => 'col', 'COL.COLO4_29594' => 'col', 'COL.COLO4_32913' => 'col', 'Cpa.g.c48079' => 'cpa', 'Cpa.g.c48138' => 'cpa', 'Cpa.g.sc104.50' => 'cpa', 'Cpa.g.sc112.7' => 'cpa', 'Cpa.g.sc115.68' => 'cpa', 'Cpa.g.sc19.167' => 'cpa', 'Cpa.g.sc54.15' => 'cpa', 'Cpa.g.sc75.4' => 'cpa', 'Cpa.g.sc75.5' => 'cpa', 'CsaV3_1G029520' => 'csa', 'CsaV3_1G031950' => 'csa', 'CsaV3_1G036230' => 'csa', 'CsaV3_2G008310' => 'csa', 'CsaV3_2G008820' => 'csa', 'CsaV3_3G037800' => 'csa', 'CsaV3_6G001870' => 'csa', 'CsaV3_6G004390' => 'csa', 'CSS0001018' => 'camsi', 'CSS0001146' => 'camsi', 'CSS0007446' => 'camsi', 'CSS0008949' => 'camsi', 'CSS0020444' => 'camsi', 'CSS0028358' => 'camsi', 'CSS0034845' => 'camsi', 'CSS0039328' => 'camsi', 'CSS0041864' => 'camsi', 'CSS0042155' => 'camsi', 'CSS0048467' => 'camsi', 'CSS0050490' => 'camsi', 'DCAR_013435' => 'dca', 'DCAR_014715' => 'dca', 'DCAR_017947' => 'dca', 'DCAR_018952' => 'dca', 'DCAR_020145' => 'dca', 'DCAR_020716' => 'dca', 'DCAR_020717' => 'dca', 'DCAR_028574' => 'dca', 'Dinv03104' => 'din', 'Dinv08411' => 'din', 'Dinv08593' => 'din', 'Dinv10618' => 'din', 'Dinv12332' => 'din', 'Dinv17999' => 'din', 'Dinv25451' => 'din', 'Dinv25452' => 'din', 'Dinv28649' => 'din', 'Dinv31749' => 'din', 'Dinv41189' => 'din', 'Dinv41293' => 'din', 'Dinv41294' => 'din', 'Dinv42768' => 'din', 'Dinv43335' => 'din', 'Duzib093G2052' => 'dzi', 'Duzib106G0225' => 'dzi', 'Duzib106G1481' => 'dzi', 'Duzib114G0392' => 'dzi', 'Duzib114G0810' => 'dzi', 'Duzib128G0420' => 'dzi', 'Duzib150G0718' => 'dzi', 'Duzib150G0927' => 'dzi', 'Duzib150G1101' => 'dzi', 'Duzib168G1018' => 'dzi', 'Duzib168G1374' => 'dzi', 'Duzib168G2367' => 'dzi', 'ECA232G3486' => 'eca', 'ECA233G1727' => 'eca', 'ECA233G4960' => 'eca', 'ECA234G0558' => 'eca', 'ECA234G0877' => 'eca', 'ECA238G1510' => 'eca', 'ECA240G3799' => 'eca', 'ECA248G1282' => 'eca', 'EL10Ac2g04840' => 'bvu', 'EL10Ac4g08705' => 'bvu', 'EL10Ac7g16181' => 'bvu', 'EL10Ac7g16806' => 'bvu', 'EL10Ac8g18253' => 'bvu', 'Eucgr.A02599' => 'egr', 'Eucgr.C00101' => 'egr', 'Eucgr.C00199' => 'egr', 'Eucgr.J00203' => 'egr', 'Eucgr.J00278' => 'egr', 'FAN02G4053' => 'fan', 'FAN05G0683' => 'fan', 'FAN05G2964' => 'fan', 'FAN07G0707' => 'fan', 'FAN07G2076' => 'fan', 'FAN09G0381' => 'fan', 'FAN10G3304' => 'fan', 'FAN11G1616' => 'fan', 'FAN12G1668' => 'fan', 'FAN12G1755' => 'fan', 'FAN12G3442' => 'fan', 'FAN14G0457' => 'fan', 'FAN16G2627' => 'fan', 'FAN17G1427' => 'fan', 'FAN17G2351' => 'fan', 'FAN21G0346' => 'fan', 'FAN22G0154' => 'fan', 'FAN22G2359' => 'fan', 'FAN25G3577' => 'fan', 'FvH4_3g38740' => 'fve', 'FvH4_4g07050' => 'fve', 'FvH4_4g09820' => 'fve', 'FvH4_6g20090' => 'fve', 'FvH4_7g24540' => 'fve', 'Glyma.02G198000' => 'gma', 'Glyma.02G226900' => 'gma', 'Glyma.07G210500' => 'gma', 'Glyma.09G060500' => 'gma', 'Glyma.10G079000' => 'gma', 'Glyma.10G121542' => 'gma', 'Glyma.10G196300' => 'gma', 'Glyma.11G174500' => 'gma', 'Glyma.11G230700' => 'gma', 'Glyma.13G092700' => 'gma', 'Glyma.13G101300' => 'gma', 'Glyma.14G193900' => 'gma', 'Glyma.15G167000' => 'gma', 'Glyma.17G058400' => 'gma', 'Glyma.17G067700' => 'gma', 'Glyma.18G026600' => 'gma', 'Glyma.18G062300' => 'gma', 'Glyma.20G073000' => 'gma', 'Glyma.20G193900' => 'gma', 'Gohir.A05G006400' => 'ghi', 'Gohir.A05G088000' => 'ghi', 'Gohir.A05G304400' => 'ghi', 'Gohir.A05G394900' => 'ghi', 'Gohir.A08G235100' => 'ghi', 'Gohir.A09G135200' => 'ghi', 'Gohir.A10G237100' => 'ghi', 'Gohir.A13G009400' => 'ghi', 'Gohir.A13G207900' => 'ghi', 'Gohir.D04G020200' => 'ghi', 'Gohir.D05G007300' => 'ghi', 'Gohir.D05G089100' => 'ghi', 'Gohir.D05G303400' => 'ghi', 'Gohir.D08G255500' => 'ghi', 'Gohir.D09G131800' => 'ghi', 'Gohir.D10G248800' => 'ghi', 'Gohir.D13G010100' => 'ghi', 'Gohir.D13G212400' => 'ghi', 'Gorai.004G272800' => 'gra', 'Gorai.006G150400' => 'gra', 'Gorai.009G007400' => 'gra', 'Gorai.009G091300' => 'gra', 'Gorai.009G322600' => 'gra', 'Gorai.011G289100' => 'gra', 'Gorai.012G023900' => 'gra', 'Gorai.013G010800' => 'gra', 'Gorai.013G242700' => 'gra', 'GSVIVG01009853001' => 'vvi', 'GSVIVG01024729001' => 'vvi', 'GSVIVG01029304001' => 'vvi', 'GSVIVG01032247001' => 'vvi', 'GSVIVG01032812001' => 'vvi', 'GSVIVG01033944001' => 'vvi', 'GSVIVG01034648001' => 'vvi', 'HanXRQChr01g0011231' => 'han', 'HanXRQChr02g0053361' => 'han', 'HanXRQChr05g0147291' => 'han', 'HanXRQChr08g0217311' => 'han', 'HanXRQChr10g0307521' => 'han', 'HanXRQChr10g0308871' => 'han', 'HanXRQChr11g0321551' => 'han', 'HanXRQChr12g0358051' => 'han', 'HanXRQChr12g0358481' => 'han', 'HanXRQChr12g0379781' => 'han', 'HanXRQChr13g0398281' => 'han', 'HanXRQChr14g0459681' => 'han', 'Haze_03471' => 'cav', 'Haze_17231' => 'cav', 'Haze_19693' => 'cav', 'Haze_22040' => 'cav', 'Haze_22152' => 'cav', 'Haze_24337' => 'cav', 'Hma1.2p1_0457F.1_g156920' => 'hma', 'Hma1.2p1_0703F.1_g206330' => 'hma', 'Hma1.2p1_0703F.1_g206340' => 'hma', 'Hma1.2p1_0703F.1_g206350' => 'hma', 'Hma1.2p1_0921F.1_g236690' => 'hma', 'Hma1.2p1_0962F.1_g241830' => 'hma', 'HPP92_010295' => 'vpl', 'HPP92_010475' => 'vpl', 'HPP92_010476' => 'vpl', 'HPP92_013472' => 'vpl', 'HPP92_017394' => 'vpl', 'HPP92_017395' => 'vpl', 'HPP92_017430' => 'vpl', 'HPP92_017431' => 'vpl', 'HPP92_019006' => 'vpl', 'HPP92_019007' => 'vpl', 'HPP92_023069' => 'vpl', 'HPP92_023741' => 'vpl', 'Hund03832' => 'sun', 'Hund06753' => 'sun', 'Hund06919' => 'sun', 'Hund06920' => 'sun', 'Hund08999' => 'sun', 'Hund13867' => 'sun', 'Hund18842' => 'sun', 'Hund19867' => 'sun', 'Hund20991' => 'sun', 'Hund26393' => 'sun', 'Lalb_Chr01g0010701' => 'lal', 'Lalb_Chr02g0150991' => 'lal', 'Lalb_Chr02g0154571' => 'lal', 'Lalb_Chr04g0252251' => 'lal', 'Lalb_Chr07g0180151' => 'lal', 'Lalb_Chr07g0180691' => 'lal', 'Lalb_Chr08g0231951' => 'lal', 'Lalb_Chr11g0075001' => 'lal', 'Lalb_Chr12g0199121' => 'lal', 'Lalb_Chr12g0199651' => 'lal', 'Lalb_Chr13g0299891' => 'lal', 'Lalb_Chr13g0300461' => 'lal', 'Lalb_Chr17g0345121' => 'lal', 'Lalb_Chr18g0050971' => 'lal', 'Lalb_Chr21g0312851' => 'lal', 'Lj1A1049T25' => 'lonja', 'Lj1A136T33' => 'lonja', 'Lj1C957G1' => 'lonja', 'Lj2A34T52' => 'lonja', 'Lj2C1083G2' => 'lonja', 'Lj2P621T34' => 'lonja', 'Lj3A924T49' => 'lonja', 'Lj4g0009510' => 'lja', 'Lj5g0003766' => 'lja', 'Lj5g0024118' => 'lja', 'Lj6g0006401' => 'lja', 'Lj6g0010333' => 'lja', 'Lj6g0018627' => 'lja', 'Lj7C469T6' => 'lonja', 'Lj9A730T53' => 'lonja', 'LjContig00155g0009749' => 'lja', 'Lju170A20G16' => 'lonja', 'Lju170C20T0' => 'lonja', 'Lsat_1_v5_gn_2_123560' => 'lsa', 'Lsat_1_v5_gn_3_53060' => 'lsa', 'Lsat_1_v5_gn_5_171201' => 'lsa', 'Lsat_1_v5_gn_5_83241' => 'lsa', 'Lsat_1_v5_gn_5_87280' => 'lsa', 'Lsat_1_v5_gn_6_35360' => 'lsa', 'Lsat_1_v5_gn_7_53320' => 'lsa', 'Lsat_1_v5_gn_8_21620' => 'lsa', 'Manes.02G195400' => 'mes', 'Manes.06G018300' => 'mes', 'Manes.06G026400' => 'mes', 'Manes.07G085900' => 'mes', 'Manes.07G130100' => 'mes', 'Manes.08G032300' => 'mes', 'Manes.09G047000' => 'mes', 'Manes.14G147300' => 'mes', 'Manes.14G163200' => 'mes', 'Mapoly0006s0101' => 'mpo', 'MBI14_g10720_MAGBIO' => 'mbi', 'MBI14_g24288_MAGBIO' => 'mbi', 'MBI15_g38430_MAGBIO' => 'mbi', 'MBI15_g39955_MAGBIO' => 'mbi', 'MBI17_g01806_MAGBIO' => 'mbi', 'MD00G1086800' => 'mdo', 'MD01G1153400' => 'mdo', 'MD03G1068500' => 'mdo', 'MD07G1222400' => 'mdo', 'MD09G1279100' => 'mdo', 'MD11G1072900' => 'mdo', 'MD12G1037900' => 'mdo', 'MD13G1261900' => 'mdo', 'MD14G1036900' => 'mdo', 'MD16G1247100' => 'mdo', 'MD16G1264200' => 'mdo', 'Medtr0168s0100' => 'mtr', 'Medtr1183s0010' => 'mtr', 'Medtr1384s0010' => 'mtr', 'Medtr1g057150' => 'mtr', 'Medtr1g090640' => 'mtr', 'Medtr2g038200' => 'mtr', 'Medtr3g070850' => 'mtr', 'Medtr3g464150' => 'mtr', 'Medtr4g127290' => 'mtr', 'Medtr4g129230' => 'mtr', 'Medtr5g071060' => 'mtr', 'Medtr7g056197' => 'mtr', 'MELO3C003958.2' => 'cme', 'MELO3C004035.2' => 'cme', 'MELO3C008299.2' => 'cme', 'MELO3C009523.2' => 'cme', 'MELO3C017420.2' => 'cme', 'MELO3C017514.2' => 'cme', 'MELO3C019911.2' => 'cme', 'MELO3C020543.2' => 'cme', 'MELO3C030523.2' => 'cme', 'Migut.D00857' => 'egut', 'Migut.F00688' => 'egut', 'Migut.F00857' => 'egut', 'Migut.J00789' => 'egut', 'Migut.J01436' => 'egut', 'Migut.K00267' => 'egut', 'Migut.L01835' => 'egut', 'Migut.L01876' => 'egut', 'MSTRG.10436' => 'ama', 'MSTRG.10724' => 'ama', 'MSTRG.19315' => 'ama', 'MSTRG.19366' => 'ama', 'MSTRG.21231' => 'ama', 'MSTRG.26238' => 'ama', 'MSTRG.26598' => 'ama', 'MSTRG.6184' => 'ama', 'MSTRG.9037' => 'ama', 'Nitab4.5_0000020g0240' => 'nta', 'Nitab4.5_0000056g0010' => 'nta', 'Nitab4.5_0000244g0070' => 'nta', 'Nitab4.5_0000684g0090' => 'nta', 'Nitab4.5_0000687g0260' => 'nta', 'Nitab4.5_0001047g0010' => 'nta', 'Nitab4.5_0001150g0030' => 'nta', 'Nitab4.5_0001212g0020' => 'nta', 'Nitab4.5_0001227g0050' => 'nta', 'Nitab4.5_0001287g0080' => 'nta', 'Nitab4.5_0001415g0020' => 'nta', 'Nitab4.5_0001516g0020' => 'nta', 'Nitab4.5_0002817g0050' => 'nta', 'Nitab4.5_0003535g0010' => 'nta', 'Nitab4.5_0004442g0010' => 'nta', 'Nitab4.5_0004442g0020' => 'nta', 'Nitab4.5_0010369g0010' => 'nta', 'Nn2g10851' => 'nnu', 'Nn2g12603' => 'nnu', 'Nn2g13139' => 'nnu', 'Nn2g14268' => 'nnu', 'Nn6g34738' => 'nnu', 'Nn8g40286' => 'nnu', 'Nn8g40676' => 'nnu', 'Oeu005839.1' => 'oeu', 'Oeu018825.1' => 'oeu', 'Oeu018826.1' => 'oeu', 'Oeu020575.1' => 'oeu', 'Oeu021975.2' => 'oeu', 'Oeu028347.1' => 'oeu', 'Oeu033279.1' => 'oeu', 'Oeu035222.1' => 'oeu', 'Oeu042629.1' => 'oeu', 'Oeu043527.1' => 'oeu', 'Oeu045037.1' => 'oeu', 'Oeu045038.1' => 'oeu', 'Oeu045319.1' => 'oeu', 'Oeu050402.2' => 'oeu', 'Oeu052238.1' => 'oeu', 'Oeu052631.1' => 'oeu', 'Oeu054242.1' => 'oeu', 'Oeu055521.1' => 'oeu', 'Os02g0464900' => 'osa', 'Os02g0537800' => 'osa', 'Os02g0788600' => 'osa', 'Os04g0298700' => 'osa', 'Os04g0416500' => 'osa', 'Os08g0250900' => 'osa', 'Os11g0104300' => 'osa', 'Os11g0156800' => 'osa', 'Os12g0104300' => 'osa', 'Peaxi162Scf00211g00144' => 'pax', 'Peaxi162Scf00231g00915' => 'pax', 'Peaxi162Scf00259g00104' => 'pax', 'Peaxi162Scf00297g00107' => 'pax', 'Peaxi162Scf00457g00017' => 'pax', 'Peaxi162Scf00519g00425' => 'pax', 'Peaxi162Scf00725g00412' => 'pax', 'Peaxi162Scf00825g00416' => 'pax', 'Peaxi162Scf01185g00025' => 'pax', 'PGR004G1494' => 'pgr', 'PGR044G1524' => 'pgr', 'PGR044G1555' => 'pgr', 'PGR044G1654' => 'pgr', 'PGR044G2381' => 'pgr', 'PGR044G2541' => 'pgr', 'PGR102G1772' => 'pgr', 'PGR119G0709' => 'pgr', 'PGR142G0257' => 'pgr', 'PGSC0003DMG400004086' => 'stu', 'PGSC0003DMG400007602' => 'stu', 'PGSC0003DMG400016388' => 'stu', 'PGSC0003DMG400016941' => 'stu', 'PGSC0003DMG400023497' => 'stu', 'PGSC0003DMG400026732' => 'stu', 'PGSC0003DMG400027472' => 'stu', 'PGSC0003DMG400028236' => 'stu', 'Phvul.001G243900' => 'pvu', 'Phvul.003G120100' => 'pvu', 'Phvul.003G140726' => 'pvu', 'Phvul.003G150300' => 'pvu', 'Phvul.006G068500' => 'pvu', 'Phvul.007G138900' => 'pvu', 'Phvul.007G234700' => 'pvu', 'Phvul.007G269100' => 'pvu', 'Phvul.008G223600' => 'pvu', 'Phvul.008G261000' => 'pvu', 'Phvul.009G235300' => 'pvu', 'Potri.001G252500' => 'ptr', 'Potri.006G073800' => 'ptr', 'Potri.006G175200' => 'ptr', 'Potri.006G204500' => 'ptr', 'Potri.008G017600' => 'ptr', 'Potri.008G069100' => 'ptr', 'Potri.009G046700' => 'ptr', 'Potri.010G188200' => 'ptr', 'Potri.010G241600' => 'ptr', 'Potri.016G071800' => 'ptr', 'Potri.018G097300' => 'ptr', 'Potri.018G140900' => 'ptr', 'Pp3c15_16120' => 'ppa', 'Pp3c1_23530' => 'ppa', 'Pp3c2_14220' => 'ppa', 'Pp3c9_16100' => 'ppa', 'Prupe.1G073700' => 'ppe', 'Prupe.1G095200' => 'ppe', 'Prupe.2G071700' => 'ppe', 'Prupe.2G250700' => 'ppe', 'Prupe.6G056400' => 'ppe', 'Prupe.7G097400' => 'ppe', 'Psat1g141640' => 'psa', 'Psat1g144800' => 'psa', 'Psat2g058160' => 'psa', 'Psat4g010720' => 'psa', 'Psat4g013520' => 'psa', 'Psat5g129160' => 'psa', 'Psat5g158160' => 'psa', 'Psat6g049000' => 'psa', 'Psat6g084880' => 'psa', 'Psat6g166560' => 'psa', 'PSO017G5049' => 'pso', 'PSO017G5449' => 'pso', 'PSO063G3889' => 'pso', 'PSO170G2160' => 'pso', 'PSO170G2216' => 'pso', 'PSO170G5277' => 'pso', 'PSO339G0086' => 'pso', 'PSO339G1093' => 'pso', 'PSO339G1780' => 'pso', 'PSO339G3608' => 'pso', 'PSO339G3911' => 'pso', 'PSO339G5803' => 'pso', 'PSO384G4576' => 'pso', 'PSO384G5099' => 'pso', 'QL01p038534' => 'qlo', 'QL02p032348' => 'qlo', 'QL02p047225' => 'qlo', 'QL02p067630' => 'qlo', 'QL02p096073' => 'qlo', 'QL03p010476' => 'qlo', 'QL04p047091' => 'qlo', 'QL04p053896' => 'qlo', 'QL04p066995' => 'qlo', 'QL07p037235' => 'qlo', 'QL10p004041' => 'qlo', 'QL12p004798' => 'qlo', 'RcHm_v2.0_Chr1g0370371' => 'rch', 'RcHm_v2.0_Chr3g0475541' => 'rch', 'RcHm_v2.0_Chr4g0399171' => 'rch', 'RcHm_v2.0_Chr4g0404601' => 'rch', 'RcHm_v2.0_Chr5g0069891' => 'rch', 'Rhsim01G0009600' => 'rsi', 'Rhsim01G0236800' => 'rsi', 'Rhsim03G0066400' => 'rsi', 'Rhsim03G0096500' => 'rsi', 'Rhsim03G0144300' => 'rsi', 'Rhsim03G0262100' => 'rsi', 'Rhsim03G0267500' => 'rsi', 'Sabra06G0055000' => 'sbr', 'Sabra06G0134000' => 'sbr', 'Sabra06G0157500' => 'sbr', 'Sabra08G0011200' => 'sbr', 'Sabra08G0050700' => 'sbr', 'Sabra09G0034100' => 'sbr', 'Sabra10G0145000' => 'sbr', 'Sabra10G0189100' => 'sbr', 'Sabra16G0072200' => 'sbr', 'Sabra16G0074000' => 'sbr', 'Sabra16G0153700' => 'sbr', 'Sabra16G0153800' => 'sbr', 'Sabra18G0084400' => 'sbr', 'Sabra18G0115100' => 'sbr', 'SalBow1G2615' => 'sbo', 'SalBow1G7668' => 'sbo', 'SalBow3G3259' => 'sbo', 'SalBow5G0144' => 'sbo', 'SalBow5G0466' => 'sbo', 'SalBow5G1874' => 'sbo', 'SalBow6G0291' => 'sbo', 'SalBow6G1757' => 'sbo', 'SalBow6G2689' => 'sbo', 'Sc09g0005120' => 'sci', 'Sc11g0005080' => 'sci', 'Sc14g0001130' => 'sci', 'Sc20g0006690' => 'sci', 'Sc21g0006410' => 'sci', 'Sc21g0006420' => 'sci', 'Sed0003488' => 'sed', 'Sed0004747' => 'sed', 'Sed0006904' => 'sed', 'Sed0008059' => 'sed', 'Sed0008184' => 'sed', 'Sed0008408' => 'sed', 'Sed0012309' => 'sed', 'Sed0014075' => 'sed', 'Sed0015015' => 'sed', 'Sed0021866' => 'sed', 'Sed0025040' => 'sed', 'Sed0025315' => 'sed', 'Sed0026367' => 'sed', 'Sed0027649' => 'sed', 'SEGI_21615' => 'sgi', 'SEGI_23172' => 'sgi', 'SEGI_28875' => 'sgi', 'SGA_v2.0_scaffold112G31611' => 'sas', 'SGA_v2.0_scaffold20G09301' => 'sas', 'SGA_v2.0_scaffold325G48697' => 'sas', 'SGA_v2.0_scaffold35G14003' => 'sas', 'SGA_v2.0_scaffold42G15874' => 'sas', 'SGA_v2.0_scaffold44G16700' => 'sas', 'SGA_v2.0_scaffold511G52623' => 'sas', 'SGA_v2.0_scaffold54G19470' => 'sas', 'SGA_v2.0_scaffold60G21007' => 'sas', 'SGA_v2.0_scaffold66G22508' => 'sas', 'SGA_v2.0_scaffold69G23288' => 'sas', 'SGA_v2.0_scaffold718G53509' => 'sas', 'SHI02990' => 'shi', 'SHI19381' => 'shi', 'SHI21266' => 'shi', 'SHI24982' => 'shi', 'SHI29578' => 'shi', 'SHI36636' => 'shi', 'SHI36854' => 'shi', 'SHI37461' => 'shi', 'SHI41176' => 'shi', 'SHI43658' => 'shi', 'SHI43976' => 'shi', 'SHI44391' => 'shi', 'SHI45861' => 'shi', 'SHI50122' => 'shi', 'SHI52644' => 'shi', 'SHI53524' => 'shi', 'SHI54473' => 'shi', 'Solyc01g007260.3' => 'sly', 'Solyc05g055200.4' => 'sly', 'Solyc06g051460.4' => 'sly', 'Solyc07g006540.3' => 'sly', 'Solyc07g018070.4' => 'sly', 'Solyc09g055230.3' => 'sly', 'Solyc10g082000.3' => 'sly', 'Solyc11g006650.3' => 'sly', 'Sopen01g003250' => 'spe', 'Sopen05g033630' => 'spe', 'Sopen06g017420' => 'spe', 'Sopen07g002620' => 'spe', 'Sopen07g006950' => 'spe', 'Sopen09g017150' => 'spe', 'Sopen10g032510' => 'spe', 'Sopen11g002580' => 'spe', 'Sp1g05960' => 'spa', 'Sp4g12530' => 'spa', 'Sp4g18240' => 'spa', 'Sp4g22480' => 'spa', 'Sp5g09810' => 'spa', 'Sp6g18860' => 'spa', 'Sp6g19400' => 'spa', 'Sp7g27730' => 'spa', 'Sp7g28220' => 'spa', 'TAR383G0266' => 'tar', 'TAR383G0803' => 'tar', 'TAR623G0048' => 'tar', 'TAR623G0900' => 'tar', 'TAR625G0053' => 'tar', 'TAR626G0730' => 'tar', 'TAR626G1471' => 'tar', 'TAR626G1540' => 'tar', 'TAR633G0375' => 'tar', 'TAR633G2054' => 'tar', 'TAR636G2550' => 'tar', 'THA.LOC104803930' => 'tha', 'THA.LOC104804150' => 'tha', 'THA.LOC104804491' => 'tha', 'THA.LOC104811815' => 'tha', 'THA.LOC104814648' => 'tha', 'THA.LOC104817771' => 'tha', 'THA.LOC104823633' => 'tha', 'THA.LOC104824318' => 'tha', 'THA.LOC104826286' => 'tha', 'THA.LOC104827401' => 'tha', 'Thecc.05G101900' => 'tca', 'Thecc.09G163400' => 'tca', 'Thecc.09G187800' => 'tca', 'Thecc.09G300100' => 'tca', 'Thecc.10G015600' => 'tca', 'Thecc.10G117000' => 'tca', 'Thhalv10006689m.g' => 'esa', 'Thhalv10010129m.g' => 'esa', 'Thhalv10012549m.g' => 'esa', 'Thhalv10012564m.g' => 'esa', 'Thhalv10016182m.g' => 'esa', 'Thhalv10016208m.g' => 'esa', 'Thhalv10016500m.g' => 'esa', 'Thhalv10024298m.g' => 'esa', 'Thhalv10024345m.g' => 'esa', 'TPR.G10381' => 'tpr', 'TPR.G11215' => 'tpr', 'TPR.G19788' => 'tpr', 'TPR.G21170' => 'tpr', 'TPR.G21835' => 'tpr', 'TPR.G29604' => 'tpr', 'TPR.G31048' => 'tpr', 'TPR.G31861' => 'tpr', 'TPR.G34581' => 'tpr', 'TPR.G39523' => 'tpr', 'TPR.G5360' => 'tpr', 'TPR.G5385' => 'tpr', 'TWI15G0257' => 'twi', 'TWI31G1030' => 'twi', 'TWI32G0801' => 'twi', 'TWI34G0712' => 'twi', 'TWI34G1191' => 'twi', 'TWI38G1516' => 'twi', 'TWI53G0616' => 'twi', 'TWI53G1675' => 'twi', 'TWI53G1685' => 'twi', 'TWI73G1249' => 'twi', 'TWI74G0670' => 'twi', 'TWI77G0171' => 'twi', 'TWI79G1733' => 'twi', 'unitig_22.g5150' => 'ugi', 'unitig_26.g9452' => 'ugi', 'unitig_699.g19408' => 'ugi', 'unitig_749.g13575' => 'ugi', 'vmacro05991' => 'vma', 'vmacro06037' => 'vma', 'vmacro06965' => 'vma', 'vmacro07267' => 'vma', 'vmacro07467' => 'vma', 'vmacro13084' => 'vma', 'vmacro14596' => 'vma', 'VMungo0251G0449' => 'vmu', 'VMungo0251G0624' => 'vmu', 'VMungo0464G0293' => 'vmu', 'VMungo0540G0434' => 'vmu', 'VMungo0540G1782' => 'vmu', 'VMungo0647G0364' => 'vmu', 'VMungo0647G0659' => 'vmu', 'VMungo0720G0662' => 'vmu', 'VMungo0720G1604' => 'vmu', 'VMungo0720G2954' => 'vmu', 'VMungo1080G1387' => 'vmu', 'VMungo1215G0409' => 'vmu', 'VMungo1215G0757' => 'vmu', 'VMungo1215G2189' => 'vmu', 'VMungo1309G2517' => 'vmu', 'VMungo1383G1088' => 'vmu', 'Zm00001eb083570' => 'zma', 'Zm00001eb086360' => 'zma', 'Zm00001eb164080' => 'zma', 'Zm00001eb178400' => 'zma', 'Zm00001eb197530' => 'zma', 'Zm00001eb240790' => 'zma', 'Zm00001eb243020' => 'zma', 'Zm00001eb257430' => 'zma', 'Zm00001eb272900' => 'zma', 'Zm00001eb404750' => 'zma', 'Zm00001eb412800' => 'zma', 'Zm00001eb420410' => 'zma', 'Zm00001eb422090' => 'zma' ) $gf_id = 'HOM05D000574' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000574' ) $data_identifier = 'HOM05D000574' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 35, 'bol' => (int) 18, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 11, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 15, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 15, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 14, 'sgi' => (int) 3, 'sas' => (int) 12, 'shi' => (int) 17, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 16, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422090' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1